GitHub - YuLab-SMU/clusterProfiler: :bar_chart: A universal …
clusterProfiler supports exploring functional characteristics of both coding and non-coding genomics data for thousands of species with up-to-date gene annotation. It provides a universal interface for …
Bioconductor - clusterProfiler
It provides a universal interface for gene functional annotation from a variety of sources and thus can be applied in diverse scenarios. It provides a tidy interface to access, manipulate, and visualize …
clusterProfiler - Guangchuang Yu
The clusterProfiler package implements methods to analyze and visualize functional profiles of genomic coordinates (supported by ChIPseeker), gene and gene clusters. clusterProfiler is released within the …
clusterProfiler 4.0: A universal enrichment tool for interpreting omics ...
To meet these requirements, we present here an updated version of our popular Bioconductor package, clusterProfiler 4.0. This package has been enhanced considerably compared with its original version …
clusterProfiler: A Universal Enrichment Tool for Interpreting Omics Data
Nov 20, 2025 · It supports Over-Representation Analysis (ORA) and Gene Set Enrichment Analysis (GSEA) for both coding and non-coding genomics data of thousands of species. It provides a unified …
Functional Enrichment Analysis with clusterProfiler
clusterProfiler, along with complementary packages, can easily be used to generate functional enrichment results using over-representation analysis from the following databases: GO, KEGG, …
Using clusterProfiler to characterize multiomics data - Nature
Jul 17, 2024 · clusterProfiler is a software package for characterizing and interpreting omics data. Functional enrichment can be achieved using either over-representation or gene set enrichment …
clusterProfiler Tutorial: GO Enrichment Analysis in R
Mar 12, 2026 · clusterProfiler is a software package for running functional enrichment analyses on gene lists, including GO enrichment analysis and pathway analysis. Gene lists are commonly obtained by …
clusterProfiler · bio.tools
Here, we present an R package, clusterProfiler that automates the process of biological-term classification and the enrichment analysis of gene clusters. The analysis module and visualization …
Biomedical Knowledge Mining using GOSemSim and clusterProfiler
Nov 18, 2025 · The book is meant as a guide for mining biological knowledge to elucidate or interpret molecular mechanisms using a suite of R packages, including ChIPseeker, clusterProfiler, DOSE, …