ENCODE
Search the ENCODE Portal ENCODE
publications – ENCODE
The human and mouse genomes contain instructions that specify RNAs and proteins and govern the timing, magnitude, and cellular context of their production. To better delineate these elements, phase …
ATAC-seq Data Standards and Processing Pipeline – ENCODE
The ENCODE ATAC-seq pipeline is used for quality control and statistical signal processing of short-read sequencing data, producing alignments and measures of enrichment.
Project Overview – ENCODE
Project Overview Project overview | Using the portal | REST API | Data organization | Data submission | Encyclopedia About the ENCODE Consortium The Encyclopedia of DNA Elements (ENCODE) …
Access to ENCODE data
The ENCODE portal contains these features to access, view, and download ENCODE data: Search metadata: The metadata describing the assays can be searched by entering any string into the text …
Data Processing Pipelines – ENCODE
Data Processing Pipelines Overview The ENCODE Data Coordinating Center Uniform Processing Pipelines are designed to create high-quality, consistent, and reproducible data. Pipelines are …
ENCODE Encyclopedia
ENCODE experiments must satisfy the data production guidelines (see the Data production guidelines link, Useful Links section below); raw data produced by the experiments are available at the …
Histone ChIP-seq Data Standards and Processing Pipeline (ENCODE 4) …
The ENCODE consortium has developed two analysis pipelines to study two different classes of protein-chromatin interactions. The histone ChIP-seq pipeline, described here, is suitable for proteins that …
Mouse Development Matrix - ENCODE
The mouse development matrix displays embryonic to postnatal mouse developmental time course data across several tissues organized as reference epigenomes.