Robust mapping of spatiotemporal trajectories and cell–cell ...
Nov 25, 2023 · Spatial trajectory inference incorporates both gene expression and spatial information to infer the order of transcriptomes (i.e. spots or cells) along a trajectory, thereby allowing the spatio ...
Topological velocity inference from spatial transcriptomic data
Jul 16, 2025 · Here we propose Topological Velocity Inference (TopoVelo), a model for jointly inferring spatial and temporal dynamics of cell fate transition from spatial transcriptomic data.
Single-cell and Spatial Transcriptomics Reveals the Spatiotemporal ...
2 days ago · Single-cell and Spatial Transcriptomics Reveals the Spatiotemporal Trajectory of the Small Peptide TAP4 in Delaying Postharvest Fruit Senescence
SIRV: spatial inference of RNA velocity at the single-cell resolution
Aug 6, 2024 · We developed a computational method to transfer RNA velocities from scRNA-seq data to spatial transcriptomics data at the single-cell level, allowing the investigation of differentiation …
Sep 4, 2023 · Abstract 2 The integration of cell transcriptomics and spatial locations to accurately organize spatial 3 trajectory is remaining challenges. Here we introduce spaTrack, a trajectory …
Spatial transition tensor of single cells - Nature Methods
May 16, 2024 · Spatial transcriptomics measures additional spatial information at individual cells or spots of a small group of cells, allowing analysis of heterogenous cell states in space 16, 17.
Inferring histology-associated gene expression gradients in spatial ...
Aug 23, 2024 · Traditional approaches in spatial transcriptomics often rely on preliminary data grouping, which can overlook subtle expression patterns in tissues. Here, the authors present Spatial Gradient ...
Single-cell and spatial transcriptomics analysis of non-small ... - Nature
May 23, 2024 · Myeloid cell populations play a critical role in lung cancer progression. Here, the authors use scRNA-seq and spatial transcriptomics to identify changes in the phenotype of macrophages …
Accurate trajectory inference in time-series spatial transcriptomics ...
Mar 19, 2025 · Most tissues contain spatially contiguous regions that develop as a unit, such as follicles in the ovary, or tubules and glomeruli in the kidney. We find that existing approaches designed to use …
空间转录组教程|| stLearn ：空间轨迹推断 - 简书
Dec 17, 2020 · spatial trajectory inference ： 这部分是此演示文本的重点，我们将在下面描述之。 spatial cell-cell interactions： 为了研究细胞-细胞相互作用 (CCI)，stLearn将细胞类型多样性和L-R共表达结 …